PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo0G0119700

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

bHLH

Protein Properties

Length: 180aa MW: 19862.8 Da PI: 5.8645

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo0G0119700	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.2	0.0007	1	17	38	54
STCHHHHHHHHHHHHHH CS HLH 38 lsKaeiLekAveYIksL 54 +sK ++L A++YI++L Spipo0G0119700 1 MSKESTLADAIDYIQEL 17 59*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	3.0E-5	1	31	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MSKESTLADA IDYIQELRGR KEELQRELQE IADAEVELQG SASSPEERPP PEPVDCKEEV 60 EVRPLGKNRL GASIVCRKRK GALAKLAEAM TTLGLEVTGV NFFTLSGVSR ILLCMEVRRW 120 PFSALIPHPT FVLRRRTDGR PSLVPFDANN QAQSFSRVPG SILLAVNYLP LEHGDLPTL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11982	30	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21330.1	2e-07	bHLH family protein

Link Out ? help Back to Top
Phytozome	Spipo0G0119700