![]() |
Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
|
Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Spipo0G0119700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 180aa MW: 19862.8 Da PI: 5.8645 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.2 | 0.0007 | 1 | 17 | 38 | 54 |
STCHHHHHHHHHHHHHH CS HLH 38 lsKaeiLekAveYIksL 54 +sK ++L A++YI++L Spipo0G0119700 1 MSKESTLADAIDYIQEL 17 59*************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.0E-5 | 1 | 31 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 180 aa Download sequence Send to blast |
MSKESTLADA IDYIQELRGR KEELQRELQE IADAEVELQG SASSPEERPP PEPVDCKEEV 60 EVRPLGKNRL GASIVCRKRK GALAKLAEAM TTLGLEVTGV NFFTLSGVSR ILLCMEVRRW 120 PFSALIPHPT FVLRRRTDGR PSLVPFDANN QAQSFSRVPG SILLAVNYLP LEHGDLPTL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11982 | 30 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G21330.1 | 2e-07 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Spipo0G0119700 |