PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0119700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 180aa    MW: 19862.8 Da    PI: 5.8645
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0119700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.20.00071173854
                    STCHHHHHHHHHHHHHH CS
             HLH 38 lsKaeiLekAveYIksL 54
                    +sK ++L  A++YI++L
  Spipo0G0119700  1 MSKESTLADAIDYIQEL 17
                    59*************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.0E-5131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MSKESTLADA IDYIQELRGR KEELQRELQE IADAEVELQG SASSPEERPP PEPVDCKEEV  60
EVRPLGKNRL GASIVCRKRK GALAKLAEAM TTLGLEVTGV NFFTLSGVSR ILLCMEVRRW  120
PFSALIPHPT FVLRRRTDGR PSLVPFDANN QAQSFSRVPG SILLAVNYLP LEHGDLPTL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119823036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.12e-07bHLH family protein